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I modified jscoverage.js and jscoverage.html. It works now, but jscoverage.exe created instrumented files with header:
"if (! top._$jscoverage) {
top._$jscoverage = {};
}
var _$jscoverage = top._$jscoverage;"

This is a problem that I'll try to fix. I should change some js code and don't necessary changed all instrumented code to remove this header.

I'm ready. I created an additional tab called "Imported" - one for imported .js files and one for included .js in the html files. Working for now . I'll start to testing.
Thank you Ed for help.

Thanks, let me know if there are any further problems.